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MartJ 0.4 Local Installation |
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Follow these instructionss to install MartJ on your system:
Windows:
[with java runtime environment v 1.4.0 or higher (eg XP)]
- download martj-bin.zip.
[without java, or if you are not sure]
- download martj-bin-jre-windows.zip.
then
- unzip into a directory using a zip program such as winzip.
- cd to the newly created martj-0.4 directory.
- run bin/martshell.bat for MartShell.
run bin/martexplorer.bat for MartExplorer.
run bin/marteditor.bat for MartEditor.
- The connection to publically available BioMart databases will be automatically created for
you. If you want to override the defaults edit registry file:
martj-0.4/data/defaultMartRegistry.xml
*NIX:
[with java runtime environment v 1.4.0 or higher]
- download martj-bin.tgz.
then
- unzip/tar into a directory using gnu zip. tar -zxvf martj-bin.tgz.
- cd to the newly created martj-0.4 directory.
- run bin/martshell.sh for MartShell.
run bin/martexplorer.sh for MartExplorer.
run bin/marteditor.sh for MartEditor.
- The connection to publically available BioMart databases will be automatically created for
you. If you want to override the defaults edit registry file:
martj-0.4/data/defaultMartRegistry.xml
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CVS Installation:
We manage the source for MartJ via cvs. Checkout the 'release-0_4' branch
of the code for the most stable version. You are welcome to checkout the
head code of MartJ, (in order to do that you need to skip the '-r
release-0_4' switch) but be aware that it is not guranteed to be stable.
cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/CVSmaster login (password: CVSUSER)
cvs -d :pserver:cvsuser@cvs.sanger.ac.uk:/cvsroot/CVSmaster co -P -r release-0_4 martj
A. Requirements:
To build MartJ from source you will need:
- java development kit v 1.4.0 or higher.
- ant.
B. Installation:
- cd to where the martj directory checked out from cvs.
- ant compile
- Follow step 4 from the binary installation.
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