BioMart Community
Location Database Description
Barcelona Supercomputing Center, Spain ICGC Catalogue of genomic abnormalities in cancer
Barts Cancer Institute, UK Pancreatic Expression Database Results from published pancreatic cancer papers
Breast Cancer Campaign, UK and Ireland BCCTB Bioinformatics Portal Breast cancer tissue information
California Institute of Technology, US SpMart Sea urchin (Strongylocentrotus purpuratus) genome database
Center for Mathematical Modeling and Center for Genome Regulation (CMM), Chile SalmonDB Genomic information for Atlantic salmon, rainbow trout, and related species
Centre National de la Recherche Scientifique (CNRS), France Cildb Database for eukaryotic cilia and centriolar structures, integrating orthology relationships for 33 species with high throughput studies and OMIM
Paramecium DB Paramecium genome database
Cold Spring Harbor Laboratory (CSHL), US Gramene Agriculturally important grass genomes
WormBase C. elegans and related nematode genomic information
European Bioinformatics Institute (EBI), UK EMMA Mouse mutant strain information
Ensembl Bacteria Genome databases for bacteria
Ensembl Fungi Genome databases for fungi
Ensembl Metazoa Genome databases for metazoa
Ensembl Plants Genome databases for plants
Ensembl Protists Genome databases for protists
HGNC Repository of human gene nomenclature and associated resources
InterPro Integrated database of predictive protein "signatures" used for the classification and automatic annotation of proteins and genomes
PRIDE Repository for protein and peptide identifications
UniProt Protein sequence and functional information
Harwell Science and Innovation Campus (MRC Harwell), UK EuroPhenome Mouse phenotyping data
Information Center for Bio-pharmacological Network (i-Pharm), South Korea i-Pharm Pharmacological network database consisting of three kinds of nodes: human diseases, drugs, and proteins
Institut national de la santé et de la recherche médicale (Inserm), France GermOnline Cross-species microarray expression database focusing on germline development, meiosis, and gametogenesis as well as the mitotic cell cycle
Institut Nationale de Recherche Agronomique (INRA), Unité de Recherche en Génomique-Info (URGI), France GnpIS Genetic and Genomic Information System (GnpIS)
International Potato Center (CIP), Peru Potato database Potato and sweetpotato phenotypic and genomic information
Jackson Laboratory, US MGI Mouse genome features, locations, alleles, and orthologs
Joint Genome Institute (JGI)/Center for Integrative Genomics (CIG), US Phytozome Comparative genomics of green plants
Kazusa DNA Research Institute (Kazusa), Japan KazusaMart Cyanobase, rhizobia, and plant genome databases
Medical Research Council, Human Genetics Unit (MRC HGU), UK EMAGE In situ gene expression data in the mouse embryo
Eurexpress Transcriptome atlas database for mouse embryo
National Center for Biotechnology Information (NCBI), US HapMap Multi-country effort to identify and catalog genetic similarities and differences in human beings
Ontario Institute for Cancer Research (OICR), Canada Reactome Curated pathway annotation database
ICGC Catalogue of genomic abnormalities in cancer
Peking University, China Rice-Map Rice (japonica and indica) genome annotation database
RhesusBase A knowledgebase for the monkey research community
Queensland Centre for Medical Genomics, Australia ICGC Catalogue of genomic abnormalities in cancer
University of California Los Angeles (UCLA), US SDxMart Saliva diagnostics for high-impact human diseases
University of Leicester, UK GWAS Central GWAS Central provides a centralized compilation of summary level findings from genetic association studies, both large and small.
INRA - French National Institute of Agricultural Research, France sigReannot Aquaculture and farm animal species microarray probes re-annotation
University of Manchester, UK PepSeeker Database of proteome peptide identifications for investigating fragmentation patterns
University of Notre Dame, US VectorBase Genome information for invertebrate vectors of human pathogens
Universitat Pompeu Fabra (UPF), Spain IntOGen Integrated multidimensional data for the identification of genes and groups of genes involved in cancer development
Regulatory Genomics Group Predictive Models of Gene Regulation from High-Throughput Epigenomics Data
University of Trento, Italy Atlas of UTR Regulatory Activity (AURA) Manually curated and comprehensive catalog of human UTRs and UTR regulatory annotations
Wellcome Trust Sanger Institute (WTSI), UK COSMIC Somatic mutation information relating to human cancers
Ensembl Genome databases for vertebrates and other eukaryotic species
IKMC Data on mutant products (mice, ES cells and vectors) generated and made available by members of the International Knockout Mouse Consotium (IKMC)
VEGA Manual annotation of vertebrate genome sequences
WTSI Mouse Genetics Project Mouse phenotyping and expression data captured from mutant mouse lines
Rfam The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).