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 BioMart   Project

BioMart is a query-oriented data management system developed jointly by the Ontario Institute for Cancer Research (OiCR) and the European Bioinformatics Institute (EBI).

The system can be used with any type of data and is particularly suited for providing 'data mining' like searches of complex descriptive data. BioMart comes with an 'out of the box' website that can be installed, configured and customised according to user requirements. Additional access is provided by graphical and text based applications or programmatically using web services or API written in Perl and Java. BioMart plugins are also available to access mart data sources using third party tools such as Galaxy, Taverna and biomaRt (BioConductor). BioMart has built-in support for query optimisation and data federation. The process of converting a data source into BioMart format is fully automated by the tools included in the package. Currently supported RDBMS platforms are MySQL, Oracle and Postgres.

BioMart is completely Open Source, licensed under the LGPL, and freely available to anyone without restrictions.


Powered by BioMart software:
  • BioMart Central Portal
  • Ensembl
  • HapMap
  • HTGT
  • Dictybase
  • Wormbase
  • Gramene
  • Rat Genome Database
  • DroSpeGe
  • ArrayExpress DW
  • GermOnLine
  • PRIDE
  • PepSeeker
  • Pancreatic Expression Database
  • Reactome
  • EU Rat Mart


  • EBI   CSH

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