Announcement

BioMart community portal temporarily unavailable

We are in the process of migrating hosting, during which time the BioMart community portal will be temporarily unavailable.

However, you can still access BioMart services at any of the BioMart community servers. The list of those servers is listed in the table below. The link to the server can be found under 'Database' heading. For example, if you are interested in using the latest Ensembl release through BioMart web interface simply click on 'Ensembl' and the link will take you to http://www.ensembl.org/biomart/martview. If you are a user of biomaRt (a part of the Bioconductor library) change the host from 'www.biomart.org' to 'www.ensembl.org'. Similar procedure can be used for all the other community servers.

We apologise for any inconvenience caused.

Location Database Description
Barts Cancer Institute, UK Pancreatic Expression Database Results from published pancreatic cancer papers
Breast Cancer Campaign, UK and Ireland BCCTB Bioinformatics Portal Breast cancer tissue information
Center for Mathematical Modeling and Center for Genome Regulation (CMM), Chile SalmonDB Genomic information for Atlantic salmon, rainbow trout, and related species
Centre National de la Recherche Scientifique (CNRS), France Cildb Database for eukaryotic cilia and centriolar structures, integrating orthology relationships for 33 species with high throughput studies and OMIM
Paramecium DB Paramecium genome database
Cold Spring Harbor Laboratory (CSHL), US Gramene Agriculturally important grass genomes
WormBase C. elegans and related nematode genomic information
Department of Genetics, University of Cambridge, Cambridge, UK DAPPER Mass spec identified protein interaction networks in Drosophilacell cycle regulation
European Bioinformatics Institute (EBI), UK Ensembl Genomes Genome databases for fungi, metazoa, plants and protists
HGNC Repository of human gene nomenclature and associated resources
InterPro Integrated database of predictive protein "signatures" used for the classification and automatic annotation of proteins and genomes
PRIDE Repository for protein and peptide identifications
UniProt Protein sequence and functional information
WormBase ParaSite Parasitic worms (helminths) are responsible for more than a billion human infections globally and have a devastating impact on livestock and agriculture.
Harwell Science and Innovation Campus (MRC Harwell), UK EuroPhenome Mouse phenotyping data
Information Center for Bio-pharmacological Network (i-Pharm), South Korea i-Pharm Pharmacological network database consisting of three kinds of nodes: human diseases, drugs, and proteins
Institut national de la santé et de la recherche médicale (Inserm), France GermOnline Cross-species microarray expression database focusing on germline development, meiosis, and gametogenesis as well as the mitotic cell cycle
Institut Nationale de Recherche Agronomique (INRA), Unité de Recherche en Génomique-Info (URGI), France GnpIS Genetic and Genomic Information System (GnpIS)
UniProt Protein sequence and functional information
International Potato Center (CIP), Peru Potato database Potato and sweetpotato phenotypic and genomic information
Joint Genome Institute (JGI)/Center for Integrative Genomics (CIG), US Phytozome Comparative genomics of green plants
Kazusa DNA Research Institute (Kazusa), Japan KazusaMart Cyanobase, rhizobia, and plant genome databases
Medical Research Council, Human Genetics Unit (MRC HGU), UK EMAGE Anatomy ontology and in situ gene expression data in the mouse ontology
Eurexpress Transcriptome atlas database for mouse embryo
National Center for Biotechnology Information (NCBI), US HapMap Multi-country effort to identify and catalog genetic similarities and differences in human beings
Peking University, China Rice-Map Rice (japonica and indica) genome annotation database
RhesusBase A knowledgebase for the monkey research community
RIKEN Center for Life Science Technologies (CLST), Japan FANTOM5 The FANTOM5 project mapped a promoter level expression atlas in human and mouse. The FANTOM5 BioMart instance provides the set of promoters along with annotation.
University of Leicester, UK GWAS Central GWAS Central provides a centralized compilation of summary level findings from genetic association studies, both large and small.
INRA - French National Institute of Agricultural Research, France sigReannot Aquaculture and farm animal species microarray probes re-annotation
GnpIS Genetic and Genomic Information System (GnpIS)
Iowa State University, US Animal Genome database Agriculturally important livestock genomes
University of Notre Dame, US VectorBase Genome information for invertebrate vectors of human pathogens
Universitat Pompeu Fabra (UPF), Spain Regulatory Genomics Group Predictive Models of Gene Regulation from High-Throughput Epigenomics Data
University of Trento, Italy Atlas of UTR Regulatory Activity (AURA) Manually curated and comprehensive catalog of human UTRs and UTR regulatory annotations
Wellcome Trust Sanger Institute (WTSI), UK COSMIC Somatic mutation information relating to human cancers
Ensembl Genome databases for vertebrates and other eukaryotic species
VEGA Manual annotation of vertebrate genome sequences
Rfam The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs).